Papers for Prof. Rafal Bogacz

Muthuraman M

Groppa S

Brown P

Dynamic control of decision and movement speed in the human basal ganglia.

2022. Nat Commun, 13(1):7530.

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PMC9729212

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2.48 MB

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Millidge B

Salvatori T

Song Y

Lukasiewicz T

Universal Hopfield Networks: A General Framework for Single-Shot Associative Memory Models

2022. Proceedings of the 39th International Conference on Machine Learning, PMLR 162:15561-15583

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PMC7614148

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2.93 MB

Unit Paper

Salvatori T

Pinchetti L

Millidge B

Song Y

Bao T

Lukasiewicz T

Learning on Arbitrary Graph Topologies via Predictive Coding

2022. Advances in Neural Information Processing Systems, 35, 38232-38244

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PMC7614467

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3.77 MB

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Weerasinghe G

Bick C

Optimizing deep brain stimulation based on isostable amplitude in essential tremor patient models.

2021. J Neural Eng, 18(4):046023.

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PMC7610712

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2.97 MB

Unit Paper

Ghezzi F

Weerasinghe G

Tinkhauser G

Kühn AA

Brown P

Bick C

Average beta burst duration profiles provide a signature of dynamical changes between the ON and OFF medication states in Parkinson's disease.

2021. PLoS Comput Biol, 17(7)e1009116.

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PMC8263069

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4.04 MB

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Weerasinghe G

Bick C

Optimal closed-loop deep brain stimulation using multiple independently controlled contacts

2021. PLoS Comput. Biol., 17(8):e1009281.

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PMC8405008

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3.01 MB

Unit Paper

Moeller M

Grohn J

Manohar S

An association between prediction errors and risk-seeking: Theory and behavioral evidence.

2021. PLoS Comput Biol, 17(7)e1009213.

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PMC8318232

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1.58 MB

Unit Paper

Oswal A

Cao C

Yeh CH

Neumann WJ

Gratwicke J

Akram H

Horn A

Li D

Zhan S

Zhang C

Wang Q

Zrinzo L

Foltynie T

Limousin P

Sun B

Husain M

Brown P

Litvak V

Neural signatures of hyperdirect pathway activity in Parkinson's disease.

2021. Nat Commun, 12(1):5185.

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PMC8408177

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4.16 MB

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van Swieten MMH

Manohar S

Hunger improves reinforcement-driven but not planned action.

2021. Cogn Affect Behav Neurosci, 21(6):1196-1206.

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PMC8563670

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1.12 MB

Unit Paper

Salvatori T

Song Y

Hong Y

Sha L

Frieder S

Xu Z

Lukasiewicz T

Associative Memories via Predictive Coding.

2021. Adv. Neural Inf. Process Syst., 34:3874-3886.

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PMC7612799

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2.18 MB

Unit Paper

Zamora M

Meller S

Kajin F

Sermon JJ

Toth R

Benjaber M

Dijk DJ

Worrell G

Valentin A

Volk HA

Denison T

Case Report: Embedding "Digital Chronotherapy" Into Medical Devices-A Canine Validation for Controlling Status Epilepticus Through Multi-Scale Rhythmic Brain Stimulation.

2021. Front Neurosci, 15:734265.

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PMC8498587

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1.97 MB

Unit Paper

Weerasinghe G

Cagnan H

Brown P

Bick C

Phase-dependence of response curves to deep brain stimulation and their relationship: from essential tremor patient data to a Wilson-Cowan model.

2020. J. Math. Neurosci., 10(1):4.

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PMC7105566

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4.54 MB

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van Swieten MMH

Modeling the effects of motivation on choice and learning in the basal ganglia.

2020. PLoS Comput. Biol., 16(5):e1007465.

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PMC7274475

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1.8 MB

Unit Paper

Dopamine role in learning and action inference.

2020. eLife, 9:e53262

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PMC7392608

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1.42 MB

Unit Paper

Song Y

Lukasiewicz T

Xu Z

Can the Brain Do Backpropagation? -Exact Implementation of Backpropagation in Predictive Coding Networks.

2020. Adv Neural Inf Process Syst, 33:22566-22579.

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PMC7610561

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635.93 KB

Unit Paper

Whittington JCR

Theories of Error Back-Propagation in the Brain.

2019. Trends Cogn. Sci., 23, 235-250

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PMC6382460

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2.21 MB

Unit Paper

Möller M

Learning the payoffs and costs of actions.

2019. PLoS Comput. Biol., 15(2):e1006285.

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PMC6413954

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2.97 MB

Unit Paper

Weerasinghe G

Cagnan H

Brown P

Bick C

Predicting the effects of deep brain stimulation using a reduced coupled oscillator model.

2019. PLoS Comput. Biol., 15(8):e1006575.

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PMC6701819

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2.63 MB

Unit Paper

Richards BA

Lillicrap TP

Beaudoin P

Bengio Y

Christensen A

Clopath C

Costa RP

de Berker A

Ganguli S

Gillon CJ

Hafner D

Kepecs A

Kriegeskorte N

Latham P

Lindsay GW

Miller KD

Naud R

Pack CC

Poirazi P

Roelfsema P

Sacramento J

Saxe A

Scellier B

Schapiro AC

Senn W

Wayne G

Yamins D

Zenke F

Zylberberg J

Therien D

Kording KP

A deep learning framework for neuroscience.

2019. Nat. Neurosci., 22:1761-1770.

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PMC7115933

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1.71 MB

Unit Paper

Herz DM

Little S

Pedrosa D

Tinkhauser G

Cheeran B

Foltynie T

Brown P

Mechanisms Underlying Decision-Making as Revealed by Deep-Brain Stimulation in Patients with Parkinson's Disease.

2018. Curr. Biol., 28(8):1169-1178.e6.

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PMC5912902

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2.66 MB

Unit Paper

Groschner LN

Chan Wah Hak L

DasGupta S

Miesenböck G

Dendritic Integration of Sensory Evidence in Perceptual Decision-Making.

2018. Cell, 173(4):894-905.

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PMC5947940

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11.31 MB

Unit Paper

Leimbach F

Georgiev D

Litvak V

Antoniades C

Limousin P

Jahanshahi M

Deep Brain Stimulation of the Subthalamic Nucleus Does Not Affect the Decrease of Decision Threshold during the Choice Process When There Is No Conflict, Time Pressure, or Reward.

2018.J Cogn Neurosci, 30(6):876-884.

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PMC6037388

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373.81 KB

Unit Paper

Malhotra G

Leslie DS

Ludwig CJ

Time-varying decision boundaries: insights from optimality analysis.

2018.Psychon Bull Rev, 25(3):971-996.

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PMC5990589

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2.92 MB

Unit Paper

Cieślak PE

Ahn WY

Rodriguez Parkitna J

Selective Effects of the Loss of NMDA or mGluR5 Receptors in the Reward System on Adaptive Decision-Making.

2018. eNeuro. 5(4):e0331-18.2018

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PMC6175304

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2.25 MB

Unit Paper

Moraud EM

Tinkhauser G

Agrawal M

Brown P

Predicting beta bursts from local field potentials to improve closed-loop DBS paradigms in Parkinson’s patients

2018. Conf Proc IEEE Eng Med Biol Soc., 2018:3766-3769

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PMC6277014

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1.41 MB

Unit Paper

Kurzawa N

Summerfield C

Neural Circuits Trained with Standard Reinforcement Learning Can Accumulate Probabilistic Information during Decision Making.

2017.Neural Comput, 29(2):368-393.

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PMC5462093

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772.46 KB

Unit Paper

Herz DM

Tan H

Brittain JS

Fischer P

Cheeran B

Green AL

Fitzgerald J

Aziz TZ

Ashkan K

Little S

Foltynie T

Limousin P

Zrinzo L

Brown P

Distinct mechanisms mediate speed-accuracy adjustments in cortico-subthalamic networks.

2017. eLife, 6:e21481

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PMC5287713

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3.47 MB

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A tutorial on the free-energy framework for modelling perception and learning.

2017.J Math Psychol, 76(Pt B):198-211.

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PMC5341759

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666.05 KB

Unit Paper

Whittington JCR

An Approximation of the Error Backpropagation Algorithm in a Predictive Coding Network with Local Hebbian Synaptic Plasticity.

2017.Neural Comput, 29(5):1229-1262.

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PMC5467749

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875.14 KB

Unit Paper

Gillies MJ

Hyam JA

Weiss AR

Antoniades CA

Fitzgerald JJ

Aziz TZ

Whittington MA

Green AL

The Cognitive Role of the Globus Pallidus interna; Insights from Disease States.

2017.Exp Brain Res, 235(5):1455-1465.

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PMC5380693

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3.97 MB

Unit Paper

Malhotra G

Leslie DS

Ludwig CJ

Overcoming indecision by changing the decision boundary.

2017.J Exp Psychol Gen, 146(6):776-805.

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PMC5459222

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3.9 MB

Unit Paper

Grogan J

Tsivos D

Smith L

Knight BE

Whone AL

Coulthard EJ

Effects of dopamine on reinforcement learning and consolidation in Parkinson's disease.

2017. eLife;6:e26801

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PMC5531832

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1.21 MB

Unit Paper

Syed EC

Grima LL

Brown P

Walton ME

Action initiation shapes mesolimbic dopamine encoding of future rewards.

2016.Nat. Neurosci., 19(1):34-6.

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PMC4697363

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741.28 KB

Unit Paper

Herz DM

Zavala B

Brown P

Neural Correlates of Decision Thresholds in the Human Subthalamic Nucleus.

2016.Curr. Biol., 26(7):916-20.

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PMC4826434

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1.35 MB

Unit Paper

Martin Moraud E

Abdi A

Baufreton J

Properties of Neurons in External Globus Pallidus Can Support Optimal Action Selection.

2016.PLoS Comput. Biol., 12(7):e1005004.

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PMC4936724

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2.62 MB

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Mikhael JG

Learning Reward Uncertainty in the Basal Ganglia.

2016.PLoS Comput. Biol., 12(9):e1005062.

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PMC5010205

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2.15 MB

Unit Paper

Dodson PD

Larvin JT

Duffell JM

Garas FN

Doig NM

Kessaris N

Duguid IC

Butt SJ

Distinct developmental origins manifest in the specialized encoding of movement by adult neurons of the external globus pallidus.

2015. Neuron, 86(2):501-13.

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PMC4416107

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4.83 MB

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Keuken MC

Van Maanen L

Schäfer A

Neumann J

Turner R

Forstmann BU

The subthalamic nucleus during decision-making with multiple alternatives.

2015.Hum Brain Mapp, 36(10):4041-4052.

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PMC4896390

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568.6 KB

Unit Paper

Grogan J

Tsivos D

Whone AL

Coulthard EJ

Dopamine and Consolidation of Episodic Memory: Timing Is Everything.

2015.J Cogn Neurosci, 27(10):2035-50.

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PMC4880040

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641.9 KB

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Pavlides A

Hogan SJ

Computational Models Describing Possible Mechanisms for Generation of Excessive Beta Oscillations in Parkinson's Disease.

2015.PLoS Comput. Biol., 11(12):e1004609.

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PMC4684204

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2.64 MB

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Nevado-Holgado AJ

Mallet N

Effective connectivity of the subthalamic nucleus-globus pallidus network during Parkinsonian oscillations.

2014.J. Physiol. (Lond.), 592(7):1429-55.

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PMC3979604

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1.14 MB

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Onslow AC

Jones MW

A canonical circuit for generating phase-amplitude coupling.

2014.PLoS ONE, 9(8):e102591.

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PMC4138025

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2.01 MB

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Cassey TC

Evens DR

Marshall JA

Ludwig CJ

Adaptive sampling of information in perceptual decision-making.

2013.PLoS ONE, 8(11):e78993.

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PMC3842256

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Green N

Huebl J

Beyer AK

Kühn AA

Heekeren HR

Reduction of influence of task difficulty on perceptual decision making by STN deep brain stimulation.

2013.Curr. Biol., 23(17):1681-4.

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Coulthard EJ

Javed S

Mooney LK

Murphy G

Keeley S

Whone AL

Distinct roles of dopamine and subthalamic nucleus in learning and probabilistic decision making.

2012.Brain, 135(Pt 12):3721-34.

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PMC3525052

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Pavlides A

Hogan SJ

Improved conditions for the generation of beta oscillations in the subthalamic nucleus--globus pallidus network.

2012.Eur. J. Neurosci., 36(2):2229-39.

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2.44 MB

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Lloyd K

Becker N

Jones MW

Learning to use working memory: a reinforcement learning gating model of rule acquisition in rats.

2012.Front Comput Neurosci, 6():87.

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PMC3483721

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Marshall JA

Gilchrist ID

Consistent implementation of decisions in the brain.

2012.PLoS ONE, 7(9):e43443.

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PMC3440404

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Onslow AC

Jones MW

Quantifying phase-amplitude coupling in neuronal network oscillations.

2011.Prog. Biophys. Mol. Biol., 105(1-2):49-57.

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Kucewicz MT

Tricklebank MD

Jones MW

Dysfunctional prefrontal cortical network activity and interactions following cannabinoid receptor activation.

2011.J. Neurosci., 31(43):15560-8.

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2.14 MB

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Lulham A

Vogt S

Brown MW

An Infomax algorithm can perform both familiarity discrimination and feature extraction in a single network.

2011.Neural Comput, 23(4):909-26.

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Larsen T

Integration of reinforcement learning and optimal decision-making theories of the basal ganglia.

2011.Neural Comput, 23(4):817-51.

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887.27 KB

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Howard-Jones PA

Demetriou S

Yoo JH

Leonards U

Toward a Science of Learning Games

2011. Brain, Mind and Education, 5(1): 33–41.

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651.41 KB

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Nevado-Holgado AJ

Terry JR

Bifurcation analysis points towards the source of beta neuronal oscillations in Parkinson's disease

2011. , (): .

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1.75 MB

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Zacksenhouse M

Holmes P

Robust versus optimal strategies for two-alternative forced choice tasks.

2010.J Math Psychol, 54(2):230-246.

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PMC3505075

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Holgado AJ

Terry JR

Conditions for the generation of beta oscillations in the subthalamic nucleus-globus pallidus network.

2010.J. Neurosci., 30(37):12340-52.

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2.21 MB

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Larsen T

Leslie DS

Collins EJ

Posterior weighted reinforcement learning with state uncertainty.

2010.Neural Comput, 22(5):1149-79.

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527.96 KB

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Larsen T

Initiation and termination of integration in a decision process.

2010.Neural Netw, 23(3):322-33.

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4.66 MB

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Zhang J

Optimal decision making on the basis of evidence represented in spike trains.

2010.Neural Comput, 22(5):1113-48.

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377.95 KB

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Howard-Jones PA

Yoo JH

Leonards U

Demetriou S

The neural mechanisms of learning from competitors.

2010.Neuroimage, 53(2):790-9.

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663.88 KB

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Forstmann BU

Anwander A

Schäfer A

Neumann J

Brown S

Wagenmakers EJ

Turner R

Cortico-striatal connections predict control over speed and accuracy in perceptual decision making.

2010.Proc. Natl. Acad. Sci. U.S.A., 107(36):15916-20.

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PMC2936628

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Hu PT

Holmes P

Cohen JD

Do humans produce the speed-accuracy trade-off that maximizes reward rate?

2010.Q J Exp Psychol (Hove), 63(5):863-91.

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PMC2908414

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Wagenmakers EJ

Forstmann BU

Nieuwenhuis S

The neural basis of the speed-accuracy tradeoff.

2010.Trends Neurosci., 33(1):10-6.

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447.3 KB

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Zhang J

Bounded Ornstein–Uhlenbeck models for two-choice time controlled tasks

2010. J Math Psychol, 54(3): 322–333.

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Marshall JA

Dornhaus A

Planqué R

Kovacs T

Franks NR

On optimal decision-making in brains and social insect colonies.

2009.J R Soc Interface, 6(40):1065-74.

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PMC2827444

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Zhang J

Holmes P

A comparison of bounded diffusion models for choice in time controlled tasks.

2009.J Math Psychol, 53(4):231-241.

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PMC2757788

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3.06 MB

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Optimal decision-making theories. In: Handbook of reward and decision making

Handbook of reward and decision making (pp. 373-397). Academic Press.

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645.83 KB

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Androulidakis Z

Lulham A

Brown MW

Computational models can replicate the capacity of human recognition memory.

2008.Network, 19(3):161-82.

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243.2 KB

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Trimmer PC

Houston AI

Marshall JA

Paul ES

Mendl MT

McNamara JM

Mammalian choices: combining fast-but-inaccurate and slow-but-accurate decision-making systems.

2008.Proc. Biol. Sci., 275(1649):2353-61.

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PMC2603220

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